Scaffold Ga0105111

Basic Information
Taxon OID	3300007811 Open in IMG/M
Scaffold ID	Ga0105111_1002087 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007811 Open in IMG/M

Scaffold ID

Ga0105111_1002087 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2119
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2119

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105111_10020872	F061983	AGGAGG	LKKFVFKVKVVPVKIFNEEGVLSEQEFEQVKTTGVYKGLKVLEIKDLGLDNFWRFMHYYELVAVSEGGGQFDCYYGDVIDVEKLKGVVAIVVKENDSEPVRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT*
Ga0105111_10020873	F080247	N/A	MIMWGKLIDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGEAIQVCVPIDATFMAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT*
Ga0105111_10020874	F076263	N/A	MLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRNYANEEATYIKFDCRNHKYTLTTVRTGIAKTTRVSSREELFRRLFPEYPPGYSEEIWGGE*
Ga0105111_10020875	F081547	GGAG	MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTINNPGLMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS*
Ga0105111_10020876	F087442	GAGG	MMREGLVKAGDLVIDCKPCYIAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVGEEGTKVNLLDIIDVRFLVERNENCVAIRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105111_1002087

Overview

Ecosystem & Geography

Associated Families

Sequences