NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105111_1004511

Scaffold Ga0105111_1004511


Overview

Basic Information
Taxon OID3300007811 Open in IMG/M
Scaffold IDGa0105111_1004511 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1315
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076263Metagenome / Metatranscriptome118Y
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0105111_10045112F087442GAGGMMKEGLVKAGNLVVDCKPCHIAGTGFNKDDVYVVSEGTVVFKWYDKIALITVSQEGVKVTLLDIIDVRFLVERNENCLVTKL*
Ga0105111_10045113F081547GAGGMSYLRGVFVNFGEETYYLSCGIVKGGTLDPEMYTVNNPELMMVRLGRDLYIMASNLKQLIPVEPIKELLASETSKVYNEMLSQGNEVKPA*
Ga0105111_10045114F076263N/AMISPEDLSAILDDLEDLCARLPEGVNFHPTLELRRGYANEEATYIKFECRNHRYILTVVREGVAKTTRFSSREELFRRVFPEYTGEGII*
Ga0105111_10045115F080247N/AMIVWGKLIECMIDADVNYLNGELFGNPLRIKGKFLVFGNLNIFEKTEMVSLSEEKTLQVCSPIDATFMAYYQGMVAIMSFYFKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNLLDKIMYR
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