NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105744_1015653

Scaffold Ga0105744_1015653


Overview

Basic Information
Taxon OID3300007863 Open in IMG/M
Scaffold IDGa0105744_1015653 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1938
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2335Long. (o)-123.9142Alt. (m)Depth (m)15.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009561Metagenome / Metatranscriptome316N
F023860Metagenome / Metatranscriptome208N
F027854Metagenome / Metatranscriptome193N
F085570Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0105744_10156533F009561AGGAMTELKDEHLETISNNRGKKYEIDKMVEQLSDAKESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLIEQLDTHLTEMRTHG*
Ga0105744_10156534F027854N/AMKLHELIDELRAKLKKSLQETLQLRKDLDLEREEHQLTQLRYENVKNAINKEVDRLNQRRPDVEIPADEPVYKKDLK*
Ga0105744_10156536F023860AGAAGMKENNMDKMKDMFELRNAIRHFLEDKLEAKVQGAGMSITEPSSADISFKIDNTNYVLTIDEV*
Ga0105744_10156537F085570N/AMHIDSYKIWSYDYDFKNSKRSKTTSIKQHLVSEECIDSKSLINLLSDLDTAWHNGYGKNIKVEVTFEPHEGE*
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