NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111036_139597

Scaffold Ga0111036_139597


Overview

Basic Information
Taxon OID3300007873 Open in IMG/M
Scaffold IDGa0111036_139597 Open in IMG/M
Source Dataset NameNeotropical army ants gut microbial communities from Monteverde, Costa Rica - Labidus sp. Gut microbial communities of Labidus sp.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Neotropical Army Ants Gut → Army Ant Gut Microbial Communities

Source Dataset Sampling Location
Location NameMonteverde, Costa Rica
CoordinatesLat. (o)10.306961Long. (o)-84.809844Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059647Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0111036_1395971F059647N/AMACTGPVLPVVGNDGQLLSRISSLKELVHFKAELRDLGLVYQVIECTAA*DKFGQISS
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