NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110931_1021824

Scaffold Ga0110931_1021824


Overview

Basic Information
Taxon OID3300007963 Open in IMG/M
Scaffold IDGa0110931_1021824 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1933
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F053632Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0110931_10218245F006217AGGAGGMIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKQMKERC*
Ga0110931_10218246F053632AGGAGMKLYKNSDGVWAGTQADARKMCGKDYSTVDVPTDKPSLLKFLNFNQVGSHTSNDKTDTHYEVYVPSEHRDNDLDSKALSYFAWGYDKLCSGQYDEGKELIRKALLNKNTRLVEQIKEAKKHKRKEEVA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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