NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105746_1013990

Scaffold Ga0105746_1013990


Overview

Basic Information
Taxon OID3300007973 Open in IMG/M
Scaffold IDGa0105746_1013990 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2315
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9153Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015974Metagenome / Metatranscriptome250N
F104717Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0105746_10139901F104717N/ALELVDKIVKGDRTKWDIILQMPLIEFLNTIAFYKAKTKERQKRLEQSATKGFNAYVVACLNEML*
Ga0105746_10139902F015974N/AMSHIEKTMNTLAIVKDWSMDKVESMPIDELTNELKKLEFLNTLPTDKVRFSFRHRGRRWKLAKTTNEICGHHFIELQQVFNGDMIESLHKVMALLTYEVDLLGRTKKVTDAQAHYQEKCELFLSLPVTTAYSYAVFFSAVYPKLLETILTYLKEEMNQLKREA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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