Scaffold Ga0105746_1040330

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105746_1040330

Scaffold Ga0105746_1040330

Overview

Basic Information
Taxon OID	3300007973 Open in IMG/M
Scaffold ID	Ga0105746_1040330 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1446
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008080	Metagenome / Metatranscriptome	339	Y
F033033	Metagenome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10403301	F008080	GGA	MLKIQIWMRGTMEYSQDTIPGPTPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGRSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYN
Ga0105746_10403304	F033033	N/A	PEDQKQFEIANQSADMYAVICHLAERLRSYRKHGNDFENVSEALDTIHTILYDELNARRIDIHD*

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