NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105747_1063823

Scaffold Ga0105747_1063823


Overview

Basic Information
Taxon OID3300007974 Open in IMG/M
Scaffold IDGa0105747_1063823 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9163Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0105747_10638231F010081N/AMQEQIDTIIKDYTEKMRGVDNTKSIPMVVKELDGIVYSMYRELYGLRDIRHNNYYLN
Ga0105747_10638232F008688N/AMNRFNKIMLGILAAILLTAMTVETPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*
Ga0105747_10638234F009135N/AMNKPKYYLTVNLPPNFNDLDAEVIKKELMTYINSRNQWGALYGPKSSKKGITIEKVIYRTNED*
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