NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102924_1000001

Scaffold Ga0102924_1000001


Overview

Basic Information
Taxon OID3300007982 Open in IMG/M
Scaffold IDGa0102924_1000001 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)358030
Total Scaffold Genes300 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (68.33%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000169Metagenome / Metatranscriptome1788Y
F000438Metagenome / Metatranscriptome1143Y
F001146Metagenome / Metatranscriptome765Y
F018213Metagenome / Metatranscriptome236Y
F023656Metagenome / Metatranscriptome209Y
F026416Metagenome / Metatranscriptome198Y
F055042Metagenome / Metatranscriptome139Y
F058326Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0102924_1000001104F000438GAGMGINMDKFEEFGRRIDEELTRLRRYIDEEVAPETEKRTAQFLREVSEKLTQAASKLESRNSARAERDSQKPPSQS*
Ga0102924_1000001144F018213GAGGMIAMLHFATLVVVTIFAAAAAFAFDWMLLRAIFVLMQPVTARRAPAPAHLAHLAHGTTQLARPYASQR*
Ga0102924_1000001146F000169AGGAGGMAKKSNLTKVAARIGGAFGKADRKAHKVVEAGSLAKEELLAISKQVGALKRQLEKTTKRLKRALN*
Ga0102924_1000001205F023656AGAAGGMNHKTSKKESKTFVEEFRERLNREDLERRWKLEALDCLFTEVEDHPESFHRLWIHPLVAAGLTLESALALLIEGRFLPN*
Ga0102924_1000001264F026416AGGMKTGRWLTWIGSVILFLTGIGHGSKFAQLQGMIQASSIKPPLDGIARACWLVFSGEMAAIAVIATVASGMERGGRIVLICAATMILDGALLFRFLGPFIGVYVTAAVAILFLAGGWMQAKAAA*
Ga0102924_100000128F055042AGGGGGMKHFSTEEWVDFVNHLVTTGQKEEMQKHLATDCKRCKETVSLWQKVRKTAALEASYQPSTDTVRLAKAAFAVSGLAQTRKESPSLIEVLFDSFLQPAVAGARSVVIGTRQMLYRADPYQIDIQIEPKPGGNRIVITGQLLDLSNPGVIGSDIQVTMSNHRGNSVVVAANQFGEFSGEIENSGDLELSIPGHGEKPIVISLRNALGNLPGGKP*
Ga0102924_100000155F001146AGGGGGMFQQVGMNNRGMMKIKDSNRKWMWWFLGVVLALQLYFVRELLAAFAIFAVGFAAIAFVVMSLYMMQKAWEVGVQRVADSQHPVVDMARRSVNAVEDLARRPLRRPGSAAAR*
Ga0102924_100000161F058326AGGAMNIAVLPVLALLLSPVAVAQTPAAIPPDLKKDIQIDIQSPIKTEGAVPVAAEPHHAHVFQNGFVQVYNVTVPPLDATLLYRDDLPYLYLILGATEIVNAVEGKPPVQMTMEDGATRYSPGGIAQVIRTDAGISFHNITVVLAHPQASPHNLGDKGNDRPLGSCPQSNATPTQNDQIPFEQVLPCFETSELRMDEVKVEGGKDYVQASPETAALLIAMSNADLDVSVGGEHAAFLHAGDVLWLPPGLARKVGDFLGTESQFLLISFKDSGTAPGK*
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