Basic Information | |
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Taxon OID | 3300007982 Open in IMG/M |
Scaffold ID | Ga0102924_1000001 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 358030 |
Total Scaffold Genes | 300 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 205 (68.33%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000169 | Metagenome / Metatranscriptome | 1788 | Y |
F000438 | Metagenome / Metatranscriptome | 1143 | Y |
F001146 | Metagenome / Metatranscriptome | 765 | Y |
F018213 | Metagenome / Metatranscriptome | 236 | Y |
F023656 | Metagenome / Metatranscriptome | 209 | Y |
F026416 | Metagenome / Metatranscriptome | 198 | Y |
F055042 | Metagenome / Metatranscriptome | 139 | Y |
F058326 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102924_1000001104 | F000438 | GAG | MGINMDKFEEFGRRIDEELTRLRRYIDEEVAPETEKRTAQFLREVSEKLTQAASKLESRNSARAERDSQKPPSQS* |
Ga0102924_1000001144 | F018213 | GAGG | MIAMLHFATLVVVTIFAAAAAFAFDWMLLRAIFVLMQPVTARRAPAPAHLAHLAHGTTQLARPYASQR* |
Ga0102924_1000001146 | F000169 | AGGAGG | MAKKSNLTKVAARIGGAFGKADRKAHKVVEAGSLAKEELLAISKQVGALKRQLEKTTKRLKRALN* |
Ga0102924_1000001205 | F023656 | AGAAGG | MNHKTSKKESKTFVEEFRERLNREDLERRWKLEALDCLFTEVEDHPESFHRLWIHPLVAAGLTLESALALLIEGRFLPN* |
Ga0102924_1000001264 | F026416 | AGG | MKTGRWLTWIGSVILFLTGIGHGSKFAQLQGMIQASSIKPPLDGIARACWLVFSGEMAAIAVIATVASGMERGGRIVLICAATMILDGALLFRFLGPFIGVYVTAAVAILFLAGGWMQAKAAA* |
Ga0102924_100000128 | F055042 | AGGGGG | MKHFSTEEWVDFVNHLVTTGQKEEMQKHLATDCKRCKETVSLWQKVRKTAALEASYQPSTDTVRLAKAAFAVSGLAQTRKESPSLIEVLFDSFLQPAVAGARSVVIGTRQMLYRADPYQIDIQIEPKPGGNRIVITGQLLDLSNPGVIGSDIQVTMSNHRGNSVVVAANQFGEFSGEIENSGDLELSIPGHGEKPIVISLRNALGNLPGGKP* |
Ga0102924_100000155 | F001146 | AGGGGG | MFQQVGMNNRGMMKIKDSNRKWMWWFLGVVLALQLYFVRELLAAFAIFAVGFAAIAFVVMSLYMMQKAWEVGVQRVADSQHPVVDMARRSVNAVEDLARRPLRRPGSAAAR* |
Ga0102924_100000161 | F058326 | AGGA | MNIAVLPVLALLLSPVAVAQTPAAIPPDLKKDIQIDIQSPIKTEGAVPVAAEPHHAHVFQNGFVQVYNVTVPPLDATLLYRDDLPYLYLILGATEIVNAVEGKPPVQMTMEDGATRYSPGGIAQVIRTDAGISFHNITVVLAHPQASPHNLGDKGNDRPLGSCPQSNATPTQNDQIPFEQVLPCFETSELRMDEVKVEGGKDYVQASPETAALLIAMSNADLDVSVGGEHAAFLHAGDVLWLPPGLARKVGDFLGTESQFLLISFKDSGTAPGK* |
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