NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102924_1000100

Scaffold Ga0102924_1000100


Overview

Basic Information
Taxon OID3300007982 Open in IMG/M
Scaffold IDGa0102924_1000100 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99640
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (71.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000812Metagenome / Metatranscriptome881Y
F012912Metagenome / Metatranscriptome276Y
F020588Metagenome / Metatranscriptome223Y
F051436Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0102924_100010015F000812GGALPDAVSNPSPAPKPRRWSIVAAGLLLLALALVVIYTSRSAFFSPLALVVVAAIGLAALLLQLRLRKDLTTPVRAPMWLNVLGLVFAVTAVFADIIRLTPTLLQIAALGAVVCFGISGTTVLHALHKKKA*
Ga0102924_10001005F012912N/AMELLLNLAWLLLALPAFWLWRGARSVPRGSKFSPVQCVLALGCMLVILFPVVSATDDLRAMRSEMEESSANKRAIRQGSQDKTSIWKCHSQPALAAAATSLIVSDRIWQPLPSLGLFAPPSPAIRHSGRSPPFSLAV*
Ga0102924_100010057F020588AGAAGGMTIDERLEALTHNLELLSLETEKHDKQIGQLGTLVTEVAEGTARLLRVVEMHEHRLDSHDDRLDKLE*
Ga0102924_100010078F051436GAGGVFNSLPAPILLDIAILSTAFSWGIGFYIVDRKAHVFSSLAIGCFVCLLGYSVASVGAPPWAVVVAPIPVDILLLWYVLRERRKMLLAYPTIWAVYIVLHVMLSSWLHYDSLIPPWKLHS*
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