Basic Information | |
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Taxon OID | 3300007982 Open in IMG/M |
Scaffold ID | Ga0102924_1000100 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 99640 |
Total Scaffold Genes | 90 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (71.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000812 | Metagenome / Metatranscriptome | 881 | Y |
F012912 | Metagenome / Metatranscriptome | 276 | Y |
F020588 | Metagenome / Metatranscriptome | 223 | Y |
F051436 | Metagenome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102924_100010015 | F000812 | GGA | LPDAVSNPSPAPKPRRWSIVAAGLLLLALALVVIYTSRSAFFSPLALVVVAAIGLAALLLQLRLRKDLTTPVRAPMWLNVLGLVFAVTAVFADIIRLTPTLLQIAALGAVVCFGISGTTVLHALHKKKA* |
Ga0102924_10001005 | F012912 | N/A | MELLLNLAWLLLALPAFWLWRGARSVPRGSKFSPVQCVLALGCMLVILFPVVSATDDLRAMRSEMEESSANKRAIRQGSQDKTSIWKCHSQPALAAAATSLIVSDRIWQPLPSLGLFAPPSPAIRHSGRSPPFSLAV* |
Ga0102924_100010057 | F020588 | AGAAGG | MTIDERLEALTHNLELLSLETEKHDKQIGQLGTLVTEVAEGTARLLRVVEMHEHRLDSHDDRLDKLE* |
Ga0102924_100010078 | F051436 | GAGG | VFNSLPAPILLDIAILSTAFSWGIGFYIVDRKAHVFSSLAIGCFVCLLGYSVASVGAPPWAVVVAPIPVDILLLWYVLRERRKMLLAYPTIWAVYIVLHVMLSSWLHYDSLIPPWKLHS* |
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