NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100402_1254705

Scaffold Ga0100402_1254705


Overview

Basic Information
Taxon OID3300007988 Open in IMG/M
Scaffold IDGa0100402_1254705 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-0102
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)805
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000449Metagenome / Metatranscriptome1126Y
F002777Metagenome530Y
F038538Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0100402_12547051F002777GGAGMNTEIMSGRIIQKIDEIGRKTYELKQKENAFYAEVKEKSRHTEIVGTDKLREMVYEKFGPEWKKIEDGKNEVNWMIYRLYISIEGEEENIKKK*
Ga0100402_12547052F000449N/AMKNKKAGEEDIPSPDLDQEYELHTSAPQEEMERYYSRKKASLLRKLRQINKKIKKNIYNPYAGDDEKYKNAPE*
Ga0100402_12547053F038538AGGMKNTKMPQSKDYKSEALGREILRKINQIGEKTYKLKKDVNDVCGLILSKPGATMFVEGHKAELWKEASDDF
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