Basic Information | |
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Taxon OID | 3300007992 Open in IMG/M |
Scaffold ID | Ga0105748_10052174 Open in IMG/M |
Source Dataset Name | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1583 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Oregon, USA | |||||||
Coordinates | Lat. (o) | 46.235 | Long. (o) | -123.9123 | Alt. (m) | Depth (m) | 10.3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006143 | Metagenome | 380 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105748_100521742 | F006143 | N/A | VIIMEEQLEPKKTPTTKFAEWLMARAEKKEEKETSLESLMKFNVFLSIATLVTVAGATVADYILMAWTWI* |
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