NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100394_1122615

Scaffold Ga0100394_1122615


Overview

Basic Information
Taxon OID3300008009 Open in IMG/M
Scaffold IDGa0100394_1122615 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010074Metagenome / Metatranscriptome308Y
F104463Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0100394_11226152F104463AGGMVQNVVSVTIPAGQQRIFFEKPHILHRIFFGITAMLNNDVWRQSRISFDGPKFYTFYVIDGPAKHFEIKGDGLPQGDIWVRNASDINIYYTATEILV*
Ga0100394_11226153F010074N/AEIKEIEILHDKEIKEEINDIEVVRTDIEKIQAYNKIIPFRTSKADTLNATSAVNRIAEKKKERRVITIQKKILANFSDTCVNFIREYFFIYNHTIFSAIKYMNIGLTQIRKDPRFIANASLKNSILSEVKTACDELLTACHPTNEHTTTLNLPQNQT*
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