Scaffold Ga0099812_1006209

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099812_1006209

Scaffold Ga0099812_1006209

Overview

Basic Information
Taxon OID	3300008029 Open in IMG/M
Scaffold ID	Ga0099812_1006209 Open in IMG/M
Source Dataset Name	Coral microbial communities from Puerto Morelos, Mexico - Diploria C C metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	549
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Mexico:La Bocana,Puerto Morelos
Coordinates	Lat. (^o)	20.8778	Long. (^o)	-86.8431	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017437	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099812_10062091	F017437	AGGAG	VSSNSLAWSFGWSVGRSLGRKHLFVFPLTNVQLHLTKRKMSSNGSANVKHSEAMSDEIVTAMSTACGASIFVFELLKKKLESICCPSYEMNVGSWQGVLIT*

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