NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099805_1535274

Scaffold Ga0099805_1535274


Overview

Basic Information
Taxon OID3300008038 Open in IMG/M
Scaffold IDGa0099805_1535274 Open in IMG/M
Source Dataset NameCoral microbial communities from Puerto Morelos, Mexico - Orbicella C B metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameMexico:Petempiche,Puerto Morelos
CoordinatesLat. (o)20.9047Long. (o)-86.8367Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015603Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0099805_15352741F015603GGAMKVLGGAVLLLHLAVSQDLSGVCTHESAETVSPLPLEIRDGEPVYRDIRFNQTHLWFYQNTNNVTVMNQPDQYRKLIINLEPCRGVVYLFVRKTRRCYPNPYSCIDVREGFEKREASQCTWTHFMSEIDGSRDGSPTFFEVPLSSTKYFISVYAPENSAYTLTVLADIGAFPRPGANGRLTARQLSELQVQISWDGSGFVPPGISDAKQYWVYSSMLLESDNRTNMAVFLRPDKIMNTVCGLQNNTDRQYSIIPADQCSNGKCNATIDGVITDKRYVFNIVAESYRGHRMAYAGLIMRTDWEVIRQAANDRTLRVVGAVSGSVLGMVIIIYFLMLKLYG*
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