Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_10024009 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9747
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9747

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F090064	Metagenome	108	N
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1002400914	F010673	N/A	MNPKLLPILQRIVARDSVLSSFNADHLPQSALAYVRHYYLNDNFLWLTPEDQDTLETLPPFADNLSESIRPAGGIGNPDSTVYHLFDDGSLWLKTNAYSSVWADARDFAVEIILPRMELTRMDAELLRAIGMDDAVESVRDDFFHAFAETLHRDCGIPHCDAREHWNAFSRQLGDSACESIVLGGSESGRAEGLRFASEYTVNA*
Ga0108970_1002400915	F103133	N/A	MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRKAAIAAREEFGELSEFLETTRIVTAETPETENIYA*
Ga0108970_1002400917	F102590	GGAG	MKTHTPGPWRTTGLNVRAGDALICYAMNHHAHAETPEPEKMANARLISLAPQMLLALQRLAHPMADDEDLDYAREVIAKAKGQQ*
Ga0108970_1002400918	F090064	AGG	MKVYWTVYFGKFRRSEYTFQGPNAKRDAQRLAKRLGGRVVREKGQQ*
Ga0108970_100240096	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSSSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALTTIICS*
Ga0108970_100240098	F000922	N/A	MTAKQWERAKAQYLSGREWQAIASDLSVPINTLRSRACREGVTKVKAQMQTICTEKKTQTLESLSALVRSKLAADAASTLERIDSYALDGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRTSVEVNVSESETK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_10024009

Overview

Ecosystem & Geography

Associated Families

Sequences