NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0108970_10522846

Scaffold Ga0108970_10522846


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10522846 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9067
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (44.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F013889Metagenome / Metatranscriptome267Y
F025022Metagenome / Metatranscriptome203Y
F072274Metagenome / Metatranscriptome121Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_1052284621F013889N/AMHRYALRFPHTFNEIKQLDGILHEEDLEGLPVSGLNHMKSRERNLPTAWDDKVISAYYEADTQ*
Ga0108970_1052284622F085130N/AMTSYYFWFCIFVFVAYLIATDNSVAYAVVLVSKIVKFQYEKTKWWVLHNPRNPIVKWFMYRKSMKLAEELMKEFAEKEKK*
Ga0108970_1052284626F072274N/AMMNTDGYISADRMWAAVPYGNRYISIYNGEQICMHNTLETAKKFIQKENRKKND*
Ga0108970_105228463F025022N/AMELTVVAIKLDDNLYHFNHSHNDTVEELLMNGTEEAIDEHCFFKTGKYPIEGDEVEISLFLEEPDDYDTLLVKEVSDEEGTTYTDTTMCLPVWLCPWLQGYFGEVPDEIYIKVRPINKGLESFVATTGMRGFLNK*
Ga0108970_105228469F000345GGAMTKPNEFGRSLQEWWDSDECKQIQKANEEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAEQEGTSHRGLQDALGIYPSGFWVDHLMDVHNSLYEYYDKIRQKNELDKDIETLQKFTET*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.