NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0108970_11017129

Scaffold Ga0108970_11017129


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_11017129 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2583
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009599Metagenome / Metatranscriptome315Y
F011368Metagenome291Y
F047018Metagenome / Metatranscriptome150Y
F093244Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_110171291F047018AGGAGMLKLIGIVAVVYIGWITGLIQATLMITAGVLIAVAGA*
Ga0108970_110171293F093244N/AMTTKSAMFVFIVGFLMTLGAVGGIEVSETNTDMMSSMVIAIVGLLTMYAGTLGLNRAHYFD*
Ga0108970_110171295F009599AGGMIKLEGLSDKDVQICTLLWNCDTIEAVDAMVKAMPPAYKKRAVVMRELMTAAQLDTVEDIHEDITQYLQRIARL*
Ga0108970_110171297F011368N/AMNHSLTHRDIAGAHLSPGDHCLVTEHNRIILARVIQVYESSNQLQLQPLSSDAGGRRSKPSLKKIRRECYNVYRIADQEITMSILRGAI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.