NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_11181612

Scaffold Ga0108970_11181612


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_11181612 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8055
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048952Metagenome / Metatranscriptome147N
F057319Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0108970_1118161211F057319N/AMELKQHQAKIAKLPYRCYSLRSAAGKRLISANAANQPSKLPAIIAALEDMPPGEYVIRCSNGSKDGYDYPINTATQGTNAPATNVSFSQASADDLKTAERLGRLETENAFLRQQLAEAGERIQSMEAEALEADWDEEADDILGDPAPSPKEQILEAIAPIIPALADKALALVDRFLNKPAAQPLSERAPVQAAPVIDYERLAEMVSQKLMEAQEPEEIS*
Ga0108970_1118161215F048952N/AMTAPNKSDIGTLAAIGGVILFWPAIKSLINLTSATAQATANVLTPTDQLLAQAAPGIYAELMKRPPLPLPSGGTPSLRRFLSDQECAALANFIEENLGGTSSDWPAIREAFRGLTLSVADQRMIYAQFGLRREWWAVAGGTKKNLFQWFRDNLDAGELAVARQIWRSANIVPAL*
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