Scaffold Ga0114372_1053423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114372_1053423

Scaffold Ga0114372_1053423

Overview

Basic Information
Taxon OID	3300008062 Open in IMG/M
Scaffold ID	Ga0114372_1053423 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - SG7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Aeronautics and Space Administration (NASA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Shallow-Sea Hydrothermal Vent, Milos, Greece

Source Dataset Sampling Location
Location Name	Milos, Greece
Coordinates	Lat. (^o)	36.674869	Long. (^o)	24.520916	Alt. (m)		Depth (m)	.01 to .2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070127	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114372_10534231	F070127	GGAG	MEELDFSITINLSLTLMEDKASINIKNVDLMPAVVSLPVRLKSQNRRASSNSEKMTIHDIILQTSKKYVVDSGQNRFTGAKLFHLSRLNHPRLKRNTFAAQVISAAPNHPSHRHYPNQKDYFFYLGKGYYKLNKKYLKIDEKQLL

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