NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110929_1002213

Scaffold Ga0110929_1002213


Overview

Basic Information
Taxon OID3300008072 Open in IMG/M
Scaffold IDGa0110929_1002213 Open in IMG/M
Source Dataset NameMicrobial Communities in Water bodies, Singapore - Site MA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31960
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (87.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034113Metagenome / Metatranscriptome175Y
F071028Metagenome / Metatranscriptome122Y
F075840Metagenome / Metatranscriptome118Y
F083438Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0110929_100221310F034113AGGAGMALTPSWKTNAEGEEEYIDKGAVTTPQINPAVDAKYAAGKAQALATDKVEWPTKVSGLTY
Ga0110929_100221312F083438AGGAGGMRKGTQAPAPMSKPKEGAMGETTKVSGGKVMAPYAGAAKPGKKVKK*
Ga0110929_100221321F071028AGGAGMAYMATTPWEYQTWGANQPWPDKYTRLSQRRIAGGTSTGTINPFLTDIARGVTIIVKDGVIETTLYPYQNTLADADWYILGGHQQVITDAQAAFLIANGYGDYVSPII*
Ga0110929_100221343F075840AGGAGMKFNNKVLEMWAKWVVGNLFTAIVIIGKSPLDFTTADWKHAANALWLAVVPVVIAWANPKHDLTMTKPK*
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