NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110929_1005923

Scaffold Ga0110929_1005923


Overview

Basic Information
Taxon OID3300008072 Open in IMG/M
Scaffold IDGa0110929_1005923 Open in IMG/M
Source Dataset NameMicrobial Communities in Water bodies, Singapore - Site MA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8929
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F010464Metagenome / Metatranscriptome303N
F023095Metagenome / Metatranscriptome211N

Sequences

Protein IDFamilyRBSSequence
Ga0110929_10059231F023095N/AMNLPTLITIPKADICKAEIAQIAQHLIDRINEGEVNPVEAHIKLKAIVKALEVTIKATEEVVTTEAAKHGKTFQAFGAEITLKEGSIGPNCDEDATYAALKAQLKAREELLKIAF
Ga0110929_100592312F001129N/AMPTPILQQMLGQGGTMEFVDAAVSGKNYDFIVVNAAATFTTLTGTGSENLLTAYNLSGKSVSAGIVISGRNGQKITAVTPSVGSVIGYTFL*
Ga0110929_100592313F000847N/AMSWIKIKQALLDLANSHPQVNSFGTGDPLAVGTDNVINLRTPSRERIVYPLVFADVQSATTNAGSLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEEWTLSTSVSLTRFVESRDDRTAGWQVTMTFEIPYGHGVCEIPT*
Ga0110929_10059238F010464AGCAGVNLIETSIATTLGAIAGGIVAWLTKGRYESDSLQVKQAQAVLAMWQTTSENQNKELTQLRNEVVVLRQRLEQMEVTIHELQSENAQLKSMQ*
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