NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110929_1018930

Scaffold Ga0110929_1018930


Overview

Basic Information
Taxon OID3300008072 Open in IMG/M
Scaffold IDGa0110929_1018930 Open in IMG/M
Source Dataset NameMicrobial Communities in Water bodies, Singapore - Site MA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3427
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F005845Metagenome / Metatranscriptome388Y
F006621Metagenome / Metatranscriptome368Y

Sequences

Protein IDFamilyRBSSequence
Ga0110929_10189303F006621GAGLANSKAKNQDPEEQVQARMDSLMMVIMTLCDCIGAVDESNAPNQYEVKMKIVDKISDLIDKIEY*
Ga0110929_10189306F001345N/AMADAATIILDLYRQGEIRKACLTITGGDQLWRDLEQETVLILLEKDPDKILKMHQQGYLRFYIVRLIINLYRGKNNQFHAKFRHHEERTEVDTQVPDNSTDYDPLLDDLWTIAQAEMDSWAKDGAFPYDKELLNLLMQTNNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGLSHPD*
Ga0110929_10189308F005845N/AQTMKTPTDFRKWQLHIRKQCVNCQQPDHAETIRPWNLNWTLLGQILQAKNS*
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