NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111541_10005004

Scaffold Ga0111541_10005004


Overview

Basic Information
Taxon OID3300008097 Open in IMG/M
Scaffold IDGa0111541_10005004 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4645
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-0.4612Long. (o)-23.033259Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083754Metagenome / Metatranscriptome112Y
F096285Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0111541_100050046F096285GGAMNWLKTAAIGIWIRAHSDLLFRALISLGIFWILNSIYSKYEAVLLATNPEKLFIPLYIYTFIIFALVIWTLLSLRWVSGISAAKKKVAAKESFTNKPDEYKKIADVASYPKLKTKKDSIIES*
Ga0111541_100050047F083754N/AMKEKELEAKAAIHREKWKAEMFLHSSSFFNEQNPKCGWEDNASVINMPQSKEDVKKYFQAYERHELDYITYSSLQIQSKIHQEIYKLPENVQIYIAGLNNAIESGAPMPWEGIVSRFFYKQHEWDLFLILDMLQKTSGITGIDDGPWPLYWFESRELLFEALHLYPELIKNTVGRSLPLRIWDQKDFVKEIVAVNFELFKSAPRHIKESRDKVLEAAEVDGRIIGFIKTRMRNDPEVAMIAVNSHADAQDYLFKKTKTELGLI*
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