Scaffold Ga0114255_102753

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114255_102753

Scaffold Ga0114255_102753

Overview

Basic Information
Taxon OID	3300008098 Open in IMG/M
Scaffold ID	Ga0114255_102753 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8646
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F055792	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114255_1027534	F040149	GAGG	VADEGAEELRWEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114255_1027535	F055792	AGG	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAIALPDVTCLDESISLQRIGGLRDLLVTPDVSETDHLQTSREEGTNLLQLMGIIARKYQLFHTFVS*

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