Scaffold Ga0114261

Basic Information
Taxon OID	3300008099 Open in IMG/M
Scaffold ID	Ga0114261_100001 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008099 Open in IMG/M

Scaffold ID

Ga0114261_100001 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	535412
Total Scaffold Genes	549 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (11.84%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

535412

Total Scaffold Genes

549 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (11.84%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F061927	Metagenome	131	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114261_10000112	F030786	N/A	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0114261_100001227	F042387	N/A	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0114261_100001232	F041827	N/A	MKRFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0114261_100001233	F041827	N/A	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGNNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIENITVYEKSHNDPTHDNDLYSVSPARFYTKEK*
Ga0114261_100001428	F061927	N/A	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114261_100001

Overview

Ecosystem & Geography

Associated Families

Sequences