NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114338_1049460

Scaffold Ga0114338_1049460


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1049460 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055421Metagenome / Metatranscriptome138N
F055422Metagenome / Metatranscriptome138N
F062460Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10494601F062460N/AKSIIEAVTTAVKEIRRESCIEKQVKSLMKIYDAIVVKDNEMSTESSLKTTRKRKRSISHE
Ga0114338_10494602F055422N/AMNNWRFSRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHLRNASPSNRSRNPSGRNRDSSDINNYSETEPLITEV*
Ga0114338_10494604F055421N/AMEEFTNPYKEINMETHLVWIAITTTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMSRIIENLSYSVTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLTKLIIGY*
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