NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114338_1082420

Scaffold Ga0114338_1082420


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1082420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F073066Metagenome / Metatranscriptome120N
F085120Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10824202F026798N/AMDKSKEKPIFHNCAEISLKSKKGNNGNIDKVIDENNQLTTIEKLALRRGIERVNRKRDSQQAKIIKMMNLLDVKQNFQDSNNQLKLQTLFNTILKLKRVYLSKSVMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSLYPNKEKIIENWYKLMKVQESP*
Ga0114338_10824204F085120AGAAGGLKETMKNQARAIKLLNRLENMLKIEMEKARTDQDKDAIRLLDKLYNLVKKIEVNHSAQKH
Ga0114338_10824205F073066N/AMEEDLRKIHLESLLNTLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLKELLE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.