NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114339_1000012

Scaffold Ga0114339_1000012


Overview

Basic Information
Taxon OID3300008106 Open in IMG/M
Scaffold IDGa0114339_1000012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107890
Total Scaffold Genes158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)89 (56.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F009071Metagenome / Metatranscriptome323Y
F012110Metagenome / Metatranscriptome283Y
F027061Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0114339_1000012105F001881N/AMNQIWEARNAGADTEEKLIASVLRIAAENIQFYTAQNDLIVLDKNDMLQLAQELEE*
Ga0114339_1000012154F012110N/AMTKALLLLAWVPLLSVASPQPNKTEFPVTISCNAAWELMDIVKNDDVVHQRKEDQLLLELRKDVITRC*
Ga0114339_100001292F027061N/AMIKMTTRALQILESTMELSMRPKSGDRQKLIARVIREAADRLCTDWGELEHPVDVLNKIADEVEAL*
Ga0114339_100001298F009071GAGMGHPEILNGIGETKMPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEQGEMCLMDWEAREWDV*
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