Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000672 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35517
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (55.36%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

35517

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (55.36%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002317	Metagenome / Metatranscriptome	571	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F006785	Metagenome / Metatranscriptome	364	Y
F021513	Metagenome / Metatranscriptome	218	Y
F068609	Metagenome / Metatranscriptome	124	Y
F073486	Metagenome	120	Y
F095168	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100067225	F073486	AGG	MTTTFHWTGSHVSGSRACAVVRYAGATDTRGSRWLATIKRDSDNTWRASATYQEGPITAALRAASKAGVEWQAVTCHSIDSDTYCVGF*
Ga0114340_100067226	F068609	AGG	MTIFRTTEPRGTFRVTYATVTAESAEQGDYADRGWLSWNGSPADEYSDSVWDLRDLTEKLAGCYAEGTGERVPSWISLDPGSDFWLSPFWRDLAGEDALGVTAYVHRPDWITDASWLRVCRLLGWRWRY*
Ga0114340_100067227	F006785	N/A	MSQGIPSAEPRQDRTMSGGEWTTKGRQREAREAEREQLRLEKRHLRDLRWAIERSTIEASDWTDLLALQAAHGKEGPIQLWRELVPYWRDCQRLNGGADIPAELFPQAMGLFSRTPEPAPAAPANRQKAARGVSRARKRRSDAGKAQPSRKAPTA*
Ga0114340_100067233	F001841	AGG	MRVVAWAFWRDPVAKPEPPQPKRPRKPTLGYTVGDIPFELLAVVRVSWYRKGLAYEVEEYKIEESEDAQAQFHYVVGTALKQGADVCVLTQYQPEELGVPV*
Ga0114340_100067238	F021513	N/A	MNMYILSEAQFDQVIKALDAARFALDTCQHVELDLTNSKQTIPLPAGECIVRTKSVQKPESQSKTRKSSRKGKRGVSVLTDVKVLEIKRQLAAGGKSVGKIAKEFGVHPTTINCIKWNKTWKHVQLQQEIAEAAA*
Ga0114340_100067246	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGQGIGLTASKEDASSWVTYERAVAAARVVAQCVNSNVAVHSVDEPTYPRSWK*
Ga0114340_100067248	F003805	GAGG	MHPIEHSPESSFHKAVTDKWLVDLFNRQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA*
Ga0114340_100067253	F002317	N/A	MDNHEEAQITVKPPDNPFNQAVPALLTASVIGLGGLFMQVAKLDQSVGTVAADIQELKNDSKERLSDLETRVRHIEMTVGNKK*
Ga0114340_10006728	F095168	GAGG	MTRDFKNLINDMKELVNKSARNAAVEIVNGLVEAGPAYSGQFSSAWYAVEPGQSPGGPRSAGGHTYKYNLRNVPQARFRSGTYYEIVNGASYAAQALDLDSGVFKTQYDNDGNILDPVKDPVAVGTRTGSKRGQVSSGTGFAVSTAPLDWYVTYTSGGAMQRDLGNGVRLGFRQGPKGGNVPGTGFG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000672

Overview

Ecosystem & Geography

Associated Families

Sequences