NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000680

Scaffold Ga0114340_1000680


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000680 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22424
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (74.07%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F010248Metagenome / Metatranscriptome306Y
F012975Metagenome / Metatranscriptome275Y
F023851Metagenome / Metatranscriptome208Y
F026561Metagenome / Metatranscriptome197Y
F074876Metagenome / Metatranscriptome119Y
F080044Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100068018F010248GAGMRKSERLRLVELEMVRMQFQIEYLNTAVKLLLEENKVKGPELDAGKWYEKKLKDLKDKS*
Ga0114340_100068021F002060N/AMSLNYTAIIIAIAAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKMDLKDLKIQLYKVERDLTEWKDKYYSAIQELISVKAELEETLIKLSLIDMDLHSQED*
Ga0114340_100068022F023851N/AMCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNDIAASELLV*
Ga0114340_100068023F074876N/AVKEYYEIINVVYVHSLKAYGTIEKMGAYASVVKYTKDGIDYQELIENDEFAIIDEIVFEHAEEEK*
Ga0114340_100068024F000473N/AMFDDKHFKHGINLFTGEPNKPVFYNQAMAKKIKEIKAPVIGLQMDIARYPDFLAIKLYEDNFIQYQGIKKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL*
Ga0114340_100068026F012975GGAMQVLNLTLKGVEVFIERSKTKNQESYWDNYDLMIWKSDHSGFTNIKGLFRKDTWGIAERISVDEQGIWKLPGKYVKHFK*
Ga0114340_100068029F003582N/AMNTYRVKLEVTAEVQAFDEGDALDYANDIFGVDDEIKNVKVISIKEN*
Ga0114340_100068041F000376GAGMSIYQEKAKECKCCGKHVPLPTVLKEYNGVPLCPTTFSNVVEYKRIWRALGSRPMGNIRKHFSEYVQQIVEETIDKNEDGTLQ*
Ga0114340_100068043F000369AGAAGMSEIEPAIHYDRMNKVVEELLKGNSPTQIATLTGFSRKEVIEFIDEWKSVIHNDTSLRDRAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIGMLQSVGVLENNELASQIAEAERKQEVLVKILKEVTSTCPKCKMEVAKRLSQITGIVESVVIEDASGI*
Ga0114340_100068053F080044AGGAGMPDLNEFLNKKSEEKPYELEHLNGVRACSKCDEDVSGAYWDPVELVMSWRCSKAHETTFRVN*
Ga0114340_10006807F026561GAGGMSMDGTGMAPPPAAGSASGAVTSQEATRKRPTQGLRSGIKVDTNRHGIRRETTNAPKPPRKTGRKKV*
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