NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000963

Scaffold Ga0114340_1000963


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18331
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F027827Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100096314F010081N/AMKEQIDAIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYHLNSFTADDKKGHCC*
Ga0114340_100096315F007859N/AMKNLLIIALLCTGCTSGMYLRYSYNRALENLPPCSRVHAINNDYITYSMIENSTNSVYVLYTNYYRAYYNCDGKITKIIKN*
Ga0114340_100096316F008688N/AMNRFNKIILGSLAAILLTAMTIEPPKLKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE*
Ga0114340_100096317F013524N/AMKTNQEVISRLRQFTSYNCNNLLDGKLCEDIRYLCDEVERFSKEVVKANNFMDEDHVTIQRYKKKLSKYESF*
Ga0114340_10009637F027827N/AMPTTTTGYPVINLTGSLLIQPAATTNQIEILQAVDDPVGQTVKSLVKISTNPYAHNWYTVWSGASYVAIGNWTDQDLQDAVVAIVTAEYPPAP*
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