Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1001783 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13070
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (45.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13070

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (45.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F010682	Metagenome	300	Y
F017472	Metagenome	240	Y
F025263	Metagenome / Metatranscriptome	202	Y
F051095	Metagenome	144	Y
F077254	Metagenome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10017831	F017472	GGCGG	VAKHKGSDDFGWHTHQPKKSNFGFKAVEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYS
Ga0114340_100178310	F010682	GGAG	MVYTPQTNWKYDKNLYHPIQSGPQRTGDDLDLTDTYLVVSSGFVTPLGFTQTWYGVNDQGADFGRIPVGPPNLSGYFTTEWKAVPPAVSGYWTNYENTLPHASGLLDTYVGFRAQGLYSTANATVQTAFGPRPGLRNFGTHTWYGEQIPDNQLYSPFQTPASNDNTIEGGGITGGGVTHPTNQSPTLTNPTNDTSGSRAAWVYHYPIYCQSLTETRYTGVPGQMGSPARNSYRGKSLRYAPNYGSVYGVLGEGVRNMVRTFSPGTKI*
Ga0114340_100178311	F051095	GAG	MSSQIERALTMFFEDPEASIACFSGSITESLTHPRGIKKVIPYLIKASIVGWMLATFVSPAIEERFKLTKNESIATSFIIGYAGIRILAAAERLAEKELERRVGVNKNDEIS*
Ga0114340_100178317	F077254	N/A	MDPYARAGFGFAKAYQMNMQAADAQRQANAPSSNAFAQILNDEETDYTYSPTPQAPAPPDDQYTGMEPDGGSVLEQTNGNSLMRAKHKVAKYLQERD*
Ga0114340_10017832	F001215	N/A	MVDRPFFRGARINNSTPVVTSPSNPDFSQLVQLVRVGDLPSEDGALVEDIFVVSSEGYPDRSGVRTAAFGVYVYAPNQAAPSTSTPLLVGKFQVGLSGSTDGLIQRVELPATVAPTPQVGDTTTVYPIERGKSEAMYLEKGYILCVGYLGNGPAAVSGGLSSSGVCIMAQGGFY*
Ga0114340_10017838	F025263	AGGAGG	MTINPNQISVAKIYPGNYTNVLRYWHEEKTVQFENANGVQTSYTNQPVGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGQNGANQPFLNANVIIPSPDFHKDVRADITNGITVPSGAFVYRTSLRVDGGDVVSSGVAGGAAAPQLTLIPAVGQGLRNTTTVVSGQFGTSVTGSDSRIANGSVASTNIINSSSLSALTADTQWKLFTTTNLGGVAASGLAQGSGIYDPRAGAGKLSGKNKALAICEVCWIVPDQPPERSDLALQPAGVIESQIYTSTSPT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1001783

Overview

Ecosystem & Geography

Associated Families

Sequences