NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1001813

Scaffold Ga0114340_1001813


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1001813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30030
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (9.62%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025465Metagenome201Y
F031032Metagenome / Metatranscriptome183Y
F033727Metagenome176Y
F039051Metagenome / Metatranscriptome164Y
F056429Metagenome137N
F058003Metagenome / Metatranscriptome135Y
F088280Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100181316F058003N/AMAKKNLNVNVDTDNIDVNVERKDGELKVNYDSKKLDVQVNKTADNVEVKVDAQGGLLKFVGNIIKKVLLRRLK*
Ga0114340_100181318F039051N/AMLPIDKFLQTIKKHGATGVLALWLFYTHTEVQDLKARLYACYGKDKHLATRQIIDTNNFAIVPKDELEIE*
Ga0114340_100181343F031032N/AVSLTLSSDYYIVFMNPTKHKQEWNALRLIMKVSEINYCLFIDYKLYSLEIHAVEKDEFEIYKYNPN*
Ga0114340_100181346F088280N/AMRNLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGLAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYRLDTCSRGLGRLLNYKRKLHKLAE*
Ga0114340_100181347F033727N/AMREQAKVLSEANEVTRSMVRFYLQKHEISLNAFSKEVGIRQPNLHKFLNGSNLSSRSIEKLGEFFSK*
Ga0114340_100181350F056429N/AMNEDLKVMRYYKNTTREQIVQIKDFKKDKVWYETIRQHETNPITEFCCSVERFKRLYIKTK*
Ga0114340_10018136F025465N/AMDELTIITGKVNLDTTYLKIKLSLEEIKQKHGTRTDLIDSMERSLADLQEVKISYDAIEKELRVALQQNFRLEKLLMEEKFKVKDLEIQLKMKDATL*
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