Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1001813 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30030 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (9.62%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025465 | Metagenome | 201 | Y |
F031032 | Metagenome / Metatranscriptome | 183 | Y |
F033727 | Metagenome | 176 | Y |
F039051 | Metagenome / Metatranscriptome | 164 | Y |
F056429 | Metagenome | 137 | N |
F058003 | Metagenome / Metatranscriptome | 135 | Y |
F088280 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100181316 | F058003 | N/A | MAKKNLNVNVDTDNIDVNVERKDGELKVNYDSKKLDVQVNKTADNVEVKVDAQGGLLKFVGNIIKKVLLRRLK* |
Ga0114340_100181318 | F039051 | N/A | MLPIDKFLQTIKKHGATGVLALWLFYTHTEVQDLKARLYACYGKDKHLATRQIIDTNNFAIVPKDELEIE* |
Ga0114340_100181343 | F031032 | N/A | VSLTLSSDYYIVFMNPTKHKQEWNALRLIMKVSEINYCLFIDYKLYSLEIHAVEKDEFEIYKYNPN* |
Ga0114340_100181346 | F088280 | N/A | MRNLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGLAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYRLDTCSRGLGRLLNYKRKLHKLAE* |
Ga0114340_100181347 | F033727 | N/A | MREQAKVLSEANEVTRSMVRFYLQKHEISLNAFSKEVGIRQPNLHKFLNGSNLSSRSIEKLGEFFSK* |
Ga0114340_100181350 | F056429 | N/A | MNEDLKVMRYYKNTTREQIVQIKDFKKDKVWYETIRQHETNPITEFCCSVERFKRLYIKTK* |
Ga0114340_10018136 | F025465 | N/A | MDELTIITGKVNLDTTYLKIKLSLEEIKQKHGTRTDLIDSMERSLADLQEVKISYDAIEKELRVALQQNFRLEKLLMEEKFKVKDLEIQLKMKDATL* |
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