Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1003790 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8348
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

8348

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (60.87%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F003582	Metagenome / Metatranscriptome	478	Y
F011394	Metagenome / Metatranscriptome	291	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F037227	Metagenome / Metatranscriptome	168	Y
F045752	Metagenome / Metatranscriptome	152	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100379011	F037227	AGGAGG	LASEVTVLDGIIEDVSIELYQKLWNAIPVEEQNEESSRAIGLNSKETTLFVIQRFMDKFNAAAEELKDK*
Ga0114340_100379013	F016396	AGAAGG	LRKSERLRLLEMQVVRLEMLVDLYSVTLNNLLESQGMEKPSLDAGKWYQKKLDGLK*
Ga0114340_100379017	F000671	AGAAGG	MEKILCYSCNKSKNKLNVRKSSLLSINLLMCETCISSKVEPRWVIILAGRQSGPDAVREFVLKKRYIGNEISASELLV*
Ga0114340_100379018	F074876	AGGA	VKESYEIINIVYLHTENTYGTVDKMGAFASVVKYTKDGIEYEELLENEDFAIIDEIVFEHQEQEEGD*
Ga0114340_100379019	F011394	N/A	MASNHFQHGINLWTGEPDKPVFYTKEMARKLRELHKPTHDLQMDIVEYPEFLAIRLYEDNFSQYDGSAKMRVIDYVEMVKKIIESYGVRCELEGKPGERKLRNN*
Ga0114340_10037902	F045752	N/A	MADPTQTPSRGDWLCPCSGCSKSIAAERKQLIELIELKKIEYLIYRGSSFDAEGNLMWAKDDAQAYAEGIDMVIKLIEDRMPKPKGKK*
Ga0114340_100379023	F003582	N/A	VKLEIEAEVEAFDQDDALDYANDIFGVDDEIKNVKVISIKEK*
Ga0114340_10037903	F026561	GGA	VSENGTGMAAPANPTPSGAVTSEEATRKNPKQGFRSGLKVDKNRHGIRRETSLGPKPPKKTRPKKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1003790

Overview

Ecosystem & Geography

Associated Families

Sequences