NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114340_1005426

Scaffold Ga0114340_1005426


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1005426 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6789
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F008814Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10054261F003582N/AVKLEVEVEVEAFDENDALDYANDIFGVDDEITNVKVISVKEK*
Ga0114340_100542613F008814N/AMDKLTVLEEIIKEVSTELYQKWYNSVPESDKNEEASQAMAKNAGETTFFVIQTFMNKFNSAAEELKDK*
Ga0114340_10054265F000473N/AMYIDKNKDHFKYGINQWTGEPNKPVFYTPEMAKALRGITKPVNNLQMDVVKYPEFLALRLYEDNFIQFTGTKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR*
Ga0114340_10054267F000671GAGGMDKVLCYSCNKSKNKLNVKKSTLLPINLLMCEGCINEKFEPRWLIIIAGRQSGADLVRDFILKKKYIGNEISASELLI*
Ga0114340_10054268F002060N/AMNLDLNAIIIAIAAAILSGMGTAIIAGLNENKKEKNRQREREQDQLKLEVKDLKIELYQLEKELTDWKDKYYDALQELILIKSELENVLRNISDGENIHNFDTEF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.