Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1007833 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9303
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9303

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026507	Metagenome	197	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F040620	Metagenome	161	N
F078409	Metagenome	116	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10078331	F036209	GAG	MVMADKVTVKMTPDSRDLKSLYKAFREMDEGAKKALKDDVTSISQWSATEMQNSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVNRRVIEKWDDNNG*
Ga0114340_100783315	F026507	GGA	MICEHGADAPKFCAICRHQGIMGKAEGITIAKESQLNWHDEAVICIRQMARTGKPFTAEDVVNEIGAPGGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDGN*
Ga0114340_100783316	F078409	AGG	VTFVRNGKIVDEIERVLENIMKEPISSDAVWASIEGKIRGHYLAAQNLPQSCPQCAKILEPVDFGVDPDTNERMWVTHCCGNWEKFYEKLGPSDLI*
Ga0114340_100783317	F040620	AGG	MTRWVQVKHDELLEYVAMVEYLRKDHTQLQEQIKDAKELASIIEATYKERLDKLTDYILDIHPANYKYERGLMDAYNIVAGHEQSA*
Ga0114340_10078333	F031795	N/A	VTEYTPYPKVIFAGVNEYADNTISNIAISLGRRDIYEQANPGIANVRLWTDADTALNVNLSDSVEIQIKDSTNAYQTIYTGIISDLDITLDAYGSDGSIAIYNITAVGPLALVNKHTTGAVGYAKEFDGTRVLNILSDVFLQDWSEIPADLTWSAVSNIATWANWDGSNITLVNNLIADIDTPGTYELAAYSGGLTDALALVQSAAQSGRGFLFEAPDGSLHYDSYGARSVYVPLTLTADDLLAAGLRQAAQWSEIVNDVTVTYNNGGEAYAADYTSQQSFGQLAGTRSTTLHNGADAEIQATAFLESRAFPRTYPEELTIPMHSPTVGNATRDALISMKVGSAIYTQELPAVFGTTFDGFVEGMKWQIDRYTAELTLVCSALSETYPHKVWLQIAPTVTWASYTPITEEWMDL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1007833

Overview

Ecosystem & Geography

Associated Families

Sequences