NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1009504

Scaffold Ga0114340_1009504


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1009504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4895
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000706Metagenome / Metatranscriptome926Y
F005323Metagenome / Metatranscriptome404N
F007223Metagenome355Y
F020007Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100950412F020007AGGAMNLTRMVRSLARAHQGLKAAPKGRGRKVAVAIGISLSIAMPLDAKASNQAIRYVKDLAKYQLTDKQEKCHHEIIYRESRWDYKAVGNKGGTKQAYGLYQMKVKSLKTGSTVKQFWMYWTYVMHRYGVTEYDEPDYCKALHHLKTKGWQ*
Ga0114340_10095042F000706GAGMSQSDFFTLYFASLAVIGGLAGYVITHLLSEIKRLNSRVDEIYNILLER*
Ga0114340_10095046F007223AGGMFDPSLGDFIVMIIMAGLYFHVGRMVGIRVGYLQGRKAVREYYEQKEKVRV*
Ga0114340_10095049F005323AGAAGGMGRLQWMNQDGEWESFPTEDEIYRAKEVVEILDTFTFTTRCCLCNETIPYKDIKVNLINKSWSCSKCHAVNGLTKP*
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