Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1010856 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4524 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009003 | Metagenome / Metatranscriptome | 324 | Y |
F026004 | Metagenome | 199 | Y |
F042339 | Metagenome | 158 | Y |
F053068 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_101085611 | F042339 | N/A | MLYWYDTAMQIDSLYQMERLKVTYYAKITGIQATSYETLAEIYKNKQSIEKAIAVEKDNEIGELKKKNRRLIITNTALTLGITGLAFSTIYFAIL* |
Ga0114340_101085612 | F026004 | GGA | MISALVIVFSVRSCNKPVTNPAIKRLQDINDSLYQIIETNNAKTDSLFLKIDSLKIEQDTIITKQQITNEIYRNETYNILSASATDNDVKFRSTLKKSDSLLKAGFYTRTYNLRQAAFQSQFQ* |
Ga0114340_10108564 | F009003 | N/A | MKAKDKAWQLYSNYFDIVEGESQEGQLAQVHFKAINCALYCVDEAITNAPSDIMQDFEGTGEFYSVKAYYHHVKNEILKLNAQKKPNAA* |
Ga0114340_10108566 | F053068 | N/A | MTQEKKETAIRRLHLALKRKFKGQAIRMTWAEMEGLLNAVQTIEMNHIYNAYNDGYLDGESGLPNKTQIEADESNTNI* |
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