Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1015593 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5714 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004051 | Metagenome / Metatranscriptome | 455 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F005177 | Metagenome / Metatranscriptome | 409 | Y |
F008132 | Metagenome / Metatranscriptome | 338 | Y |
F051126 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_101559310 | F004840 | AGGAG | MYKLTCAYDDNPPHWSAEYENEFGAWENFFLFTDWAFADEYSTVNLFTPTGKCYTRIFYREGRRVVTK* |
Ga0114340_101559313 | F051126 | AGG | MSALTLSIPALLVGKHYRSRSRHDEGTILHAEKREGIWYGEGLEAYVVEVASTRSIKNFWATVAVKVSD* |
Ga0114340_101559316 | F008132 | GGA | MTKWDTIQADVSDMYAHLQEEEMYEQLMAEEEDVFGFVKAIQIDHLTDEQVDEIFDMFGDK* |
Ga0114340_10155932 | F005177 | N/A | MKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGTIRAYVYDQLKKKKTTALIIPAEFIPKKNPLTNLLA* |
Ga0114340_10155934 | F004051 | AGGA | MTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNDSLV* |
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