NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1015593

Scaffold Ga0114340_1015593


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1015593 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5714
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004051Metagenome / Metatranscriptome455Y
F004840Metagenome / Metatranscriptome421Y
F005177Metagenome / Metatranscriptome409Y
F008132Metagenome / Metatranscriptome338Y
F051126Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_101559310F004840AGGAGMYKLTCAYDDNPPHWSAEYENEFGAWENFFLFTDWAFADEYSTVNLFTPTGKCYTRIFYREGRRVVTK*
Ga0114340_101559313F051126AGGMSALTLSIPALLVGKHYRSRSRHDEGTILHAEKREGIWYGEGLEAYVVEVASTRSIKNFWATVAVKVSD*
Ga0114340_101559316F008132GGAMTKWDTIQADVSDMYAHLQEEEMYEQLMAEEEDVFGFVKAIQIDHLTDEQVDEIFDMFGDK*
Ga0114340_10155932F005177N/AMKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGTIRAYVYDQLKKKKTTALIIPAEFIPKKNPLTNLLA*
Ga0114340_10155934F004051AGGAMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNDSLV*
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Institute for Fundamental Biomedical Research
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