NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1021029

Scaffold Ga0114340_1021029


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1021029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5368
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002598Metagenome / Metatranscriptome544Y
F003690Metagenome / Metatranscriptome473Y
F010085Metagenome / Metatranscriptome308Y
F080026Metagenome / Metatranscriptome115Y
F084151Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_102102910F084151AGAAGMTIEYSLWQGSRLLSIGNTATSIKDIDKVVAELNSSDIAKKVKFSANVMKVEVK*
Ga0114340_102102912F003690GGAGMIPSGFELVISNEYGLEFDSFLGAIYLPWHTIIIITLSVIAYKIYKRFYK*
Ga0114340_102102916F002598AGAAGGMATKLYTIESLLVGKNYRSTNRHFSGEIVSAEPRPEIWYGENTEAFLIEVNAGGLRNKFA
Ga0114340_10210292F010085AGGAGGMKKIQYVSKYIRLSEEGLVPRLECPMDQGPLFCNISMNDEIYLYCLSCNYKQYIGNATYDKIVSLVEKISNEA*
Ga0114340_10210297F080026AGGAMAYSQDQMEFAHMVAFRLKEILEVCPNVDEKSTCWTVHEKAHQRCYDLMVLLAEITNLPEYLEFLGNHPETKVNPYGFITALPPAKRFKEDPETDIDFVQDIVDLEQ*
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