Scaffold Ga0114341

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10000190 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	167479
Total Scaffold Genes	248 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (14.92%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

167479

Total Scaffold Genes

248 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (14.92%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022647	Metagenome	213	Y
F023045	Metagenome / Metatranscriptome	211	Y
F025746	Metagenome / Metatranscriptome	200	Y
F035224	Metagenome / Metatranscriptome	172	Y
F053825	Metagenome / Metatranscriptome	140	Y
F076097	Metagenome / Metatranscriptome	118	Y
F092027	Metagenome	107	Y
F097340	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_10000190121	F092027	N/A	MKKERIIYVEVPKEIWDAHNSIWNWRRDIIGAWVKSIKDVVNQMNKYENKTC*
Ga0114341_10000190152	F076097	N/A	MSQLLSKIKSSLLGLKGEKPARFGVDPVPPDSLHLTYSTTGTPKIKWRKISGEDTKPTPSRLDINDSKDKYGPNKKYGK*
Ga0114341_10000190177	F053825	N/A	MIKLIDLLELEKPKKIYADREPGKEITIADLTPEEYEDLLKKGSILVNLPPDPSRPETSTSQVISLPKIDQIKRDVIQNKREFDVFMFSSNPDIKNTAKEINKLYNQLFKAMNALDKLLALQKQGRI*
Ga0114341_10000190179	F097340	N/A	MIKLIDILTEALVLYKIEVLIKTSKNVNQVFIYNEIRGLKDVVVVTVEQNDFLRSKSTDKHQYALLKIKYLALKEPKAAIDSIKMDALSANKIQGLLQFIPRFNTIEKVGQY*
Ga0114341_10000190208	F022647	AGG	MIRLSELLDLISEGKVEYPSNHKPGMRVTKGGSMCANCEYHEVKGNMCNNKYWLQWKNGDAKIQAPADEYCCDWWHEK*
Ga0114341_10000190235	F025746	N/A	MNTKTFKKLIKEAVVDAIHEELPYILEEHMARQEKKALRENKTLNFTSANVPSTVSNVRNQLATQMGEVFGFSQPSATNSLKVIDAVDESTGEKVNPYLAFIEDAANNMTPMDRQGLRNLD*
Ga0114341_1000019039	F035224	N/A	MKNSNEFYSKLKNRDSDLILKMAKCILSAYKRGKDQIDIFEITFKNTDQLIFGVGKSQYKEVLNNCINDLAELEEYELCAEIKKIVEGKKRGRKVKESNV*
Ga0114341_1000019072	F023045	N/A	MLNRPELAQKFNEFKLPKEIVEAYRAGMPMIGSLGFTKMMMFANQEKITNDDIDYFMSCPPRRMEDESYEDMKTRTQFANKLYKYRPYLYDYKANMILKKTHGVNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114341_10000190

Overview

Ecosystem & Geography

Associated Families

Sequences