Scaffold Ga0114341

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10000927 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31959
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (29.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31959

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (29.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F015723	Metagenome / Metatranscriptome	252	Y
F015858	Metagenome / Metatranscriptome	251	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000092737	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAMWLAKQAADKASGREVQDEMIDHLMNVHHADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMILEIERLQRIIEDNI*
Ga0114341_1000092739	F015723	N/A	MAKIISITPKGQWQDLFKLELRFDNGDFGTAFAKSPTPSYAVGDEVDYTKNEKGTIKINKPFTGGFSGGNGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSAATHQEHFASRNESPF*
Ga0114341_1000092740	F039112	N/A	LHICHVKQKPIIMTLSLSQDTYSQTIVAQQAQIKALQDKVQELNARIEVLEQQAVLFI*
Ga0114341_1000092743	F033779	N/A	MRHNRPVTLTILTAAILAAVSGCRTAQPILQSVIVKDTVIVTETKYLLDTLEVLKDTTIYQDKVRLQLKYIDRKVVVEAMCEPDTIRVTQTKLLTKQEPKKKSWESYVGMLAFILTFAYVVKRWVDKLTA*
Ga0114341_1000092746	F093771	N/A	MTKESADSVITSWSLTGAGLLVGYVHQALGLLVLVASLAYTLWKWRRDWLKEKNNAN*
Ga0114341_1000092749	F015858	N/A	MNLISWGIVYCSSWFGQVDETTLSIQNESAPPCFAPVNEIADEFVDRVTADGGVVEGYDCLVGALQDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114341_10000927

Overview

Ecosystem & Geography

Associated Families

Sequences