NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10003516

Scaffold Ga0114341_10003516


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10003516 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14484
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041487Metagenome / Metatranscriptome160Y
F062766Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_100035165F041487N/AMETATKEKIVYGSFLQDRIVAIKPVESSGKWSNLLVQGQEKLKDPFMYNKTKRSYQVPLNSETRGGGVKVILDDITRVKIQKYMESFPHGMTQKEFFEKELGVDLNPTLPVEKNFWRTDRRGRVILTKEGATLNLNLPLDMLKYLILISNKMLVSPSYDERVNKATYEFMIVDESKVTSKKLEEADLKAQAYVKYAEVTNSKTATIGFIKSLGRTIPVSANETWLKSEVAKIVENDPRYFLEIVNHPQYNERIFVQEAVEAGAIIRKGEKRYTLDNGSELGDLTDVINYLLNPDNQEVKLRIKAKIELTKRK*
Ga0114341_100035166F062766N/AMTANEMANELELKLDRSDSYGSPGYEDFELSSVLTEATNFYVKKFYDEVNNRKGKGFEEIEIRNQGLAALVKDAASLPVSASQVGVLSNSLIQGKFFDLPTDHMYTIFEECVIDKTECATTYPIYAYVIAVAHNEVQRFNWSKYKKPFYKSYGDSRVWRIEYSRQTSGINPAQPATAKRHEILTDGTFNIVTYHMRYLKNPSNINVDRDTPANQQNCELDESTHRVIIDIATDLMMQRVKEQKVQTVEPFKDLE*
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