NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10008128

Scaffold Ga0114341_10008128


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10008128 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8400
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F038676Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1000812810F005349N/AMYVIHKQLIPTDANVGDPNWAKRQIWVLKLNPNDTIDEFESLEDAEVKKNELISSDPTGRIYKISIKNEDGSFSDT*
Ga0114341_1000812811F004154N/AMSKVRYYILRYWVAVIFLGLAFYFYEPHQSITHCSPNSLITDVEPKTLLGLGEMSWMWILMAIAHSANTCYCDIKSLLKKR*
Ga0114341_1000812813F002092N/AQKALDYLKSNPIVAKFIEKLDNERKEYYDKASMPNQYKPVVVEVGNKFIRIWHGSSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGVYGPEYL*
Ga0114341_100081283F038676N/AMRKKEVKIPMTPITEDTFIRQGWKKIEAGDGISEDGGDEDGHYYWVLPIPKYREDEFAPILVSNSTDEQLMLKEIGLKPGQFFIEIGDMDGLGFCGSEEELDILYSALCGEDIEENLENQE*
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