NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10009510

Scaffold Ga0114341_10009510


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10009510 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7600
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010321Metagenome / Metatranscriptome305Y
F011583Metagenome289Y
F012573Metagenome / Metatranscriptome279Y
F020497Metagenome223Y
F054035Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1000951010F010321N/AMDILDQKQQEELERLNRALVSQSLQPEDRKLLNRKLFNPKTGELQLFTDNEKGGVKLSSINLFGD*
Ga0114341_1000951012F020497GAGMKELIKLESINVWAGPLGIMNCDDSGLPILEESKSWDTIEPEWFQHLSNEDKDLVNTIINNNKNNKD*
Ga0114341_1000951014F054035N/AMRFAGTKRSQYTTERVRKMRMERALVKAKKDGVSNEQVQHYLGKLQAAGHMKVEGFRSMNIEQNMLADAFSKSLGMTGVTKTIKLEYELYNAKGMDDKPHFSGYLRSASEVDKQYRLKGWFNEDGTIRLELVN*
Ga0114341_1000951016F012573GGAMNKDTTKDWMDKLVKNYRIPDEQPKEKKEPIRMLKESQLRIIMERDKKDLDKKK*
Ga0114341_1000951021F011583N/AMKRNYYEFWAKRFMKDGLKAIKLIIGLGLAFSFGYSVNLPIGILFFGWVLVEALLDKN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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