NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10018783

Scaffold Ga0114341_10018783


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10018783 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7610
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F005389Metagenome / Metatranscriptome402Y
F009005Metagenome / Metatranscriptome324Y
F017129Metagenome / Metatranscriptome242Y
F029999Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1001878310F003291N/AMNMSYNTEKLVDVFTQDELSAMMTAVAGYVNTKRKQGRSTGVEVKAFNKIVDALLASNYLNAVEVKPNANAPMGSAEYKAWEAMYDSDVRAHS*
Ga0114341_1001878317F017129N/AMSTTYNNYNDVQAYEALESERTATMLDPKYQQWVQELHISQSYVEPEGAIKAKYLNDQYDFSTDSSKSGFLNFLKIKGIWS*
Ga0114341_100187832F009005N/AMYLTESEMIERAGQIGMDEELVSYAKQIQRQLSTEGDTADWLDCLEMAYNELIITN*
Ga0114341_100187836F005389N/AMANRKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVTEDGVMYSQYETSLKKAKTLRNEWVGA*
Ga0114341_100187838F029999N/AMYNENPFKSFSASKMSENPRFNVSVEYTDFMGNTHRIVCKTRKAFNEAREFLSLFKSESVTINRILGEYPVSMGKFPKKFHKEIKSELQSAGFGTISKYLLK*
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