NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10022242

Scaffold Ga0114341_10022242


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10022242 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4464
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y
F022861Metagenome / Metatranscriptome212Y
F042298Metagenome / Metatranscriptome158Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1002224210F010462N/AMPVMLYQLPNGKVIHLTIEEFLDLADQDIQYLMSIDFGEHIRDPFTGSAVEKNTREKYIDIEFLPMEDYDLNDIPSDESPFDDIIDLEDPLDN*
Ga0114341_100222422F042298N/AMGRMKEAYIQIMNENGGIPEDMTLGDMLRMKELNIYHWQEYERAQERARLQSNKQTDLGETAKDSEGKSIRREENN*
Ga0114341_100222424F022861AGTAGMRAICIDASNRPSKVPDSEWIVEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAESFPYELYDAERFLPLDLLSQAFTETKETVKEADLELI*
Ga0114341_100222428F000716N/AMEKLKQEIRNYQLNAGKTYMQYEQDKYSIYQNYLYKRALYGLDSLTEKELTAMCGKKKQRILNVYKRAQNVLNIFKQKVAIKYTNDIFKSLFPNSDLTKEIVSFDYTDEKFKNTLTFKDLNIGKDQIISIFIAEGILPKNFLSLKEAPVSLPSLKNESQA*
Ga0114341_100222429F076942N/AMNSKVIVTADPTTNSVINVSKNKPEWGYIRVEQVRTMIDDNGFLKRKSVSAIVPALLEDLQASGFFAGQQLEGKIIVEESLEPFNEKTPERDLKIAGETGVVCTLGGLPIYRRTKFSFDGNVSDTLIKHDNVDQLRAAYANASKANTSAIQNAAGQDFNI*
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