NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114343_1035500

Scaffold Ga0114343_1035500


Overview

Basic Information
Taxon OID3300008110 Open in IMG/M
Scaffold IDGa0114343_1035500 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2042
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0114343_10355002F019476N/AMNEPKLKTARIILEIEWEAVDDSDLPALWDWKRIKMPMDLTKVKYIGVHTSNGPENVSNWMGN*
Ga0114343_10355003F024047GGAMTIVKKLDIVDWLKTAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII*
Ga0114343_10355004F009135N/AMSNPRYYLKVNLPPNFNELDAEVIKKELMTYINSRNQWGALYGPKSTKKGITIEKVLYRTNED*
Ga0114343_10355005F013524N/AMKTKQVVDNLREFTNNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYIKKLEKCQLKLSNYEPF*
Ga0114343_10355006F008688N/AMNRFNKIMLGSLAAIMLTAMSVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEER
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