Basic Information | |
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Taxon OID | 3300008110 Open in IMG/M |
Scaffold ID | Ga0114343_1035500 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2042 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008688 | Metagenome / Metatranscriptome | 329 | N |
F009135 | Metagenome / Metatranscriptome | 322 | Y |
F013524 | Metagenome / Metatranscriptome | 270 | Y |
F019476 | Metagenome / Metatranscriptome | 229 | N |
F024047 | Metagenome / Metatranscriptome | 207 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114343_10355002 | F019476 | N/A | MNEPKLKTARIILEIEWEAVDDSDLPALWDWKRIKMPMDLTKVKYIGVHTSNGPENVSNWMGN* |
Ga0114343_10355003 | F024047 | GGA | MTIVKKLDIVDWLKTAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII* |
Ga0114343_10355004 | F009135 | N/A | MSNPRYYLKVNLPPNFNELDAEVIKKELMTYINSRNQWGALYGPKSTKKGITIEKVLYRTNED* |
Ga0114343_10355005 | F013524 | N/A | MKTKQVVDNLREFTNNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYIKKLEKCQLKLSNYEPF* |
Ga0114343_10355006 | F008688 | N/A | MNRFNKIMLGSLAAIMLTAMSVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEER |
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