Basic Information | |
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Taxon OID | 3300008113 Open in IMG/M |
Scaffold ID | Ga0114346_1050357 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2081 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F031494 | Metagenome | 182 | Y |
F070106 | Metagenome | 123 | N |
F105174 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114346_10503572 | F031494 | N/A | MQVIVLLSTDVEPDIAELILEHKLEGGYSLDYALNSLVSYYKGKEIIIFNFKKYFALDNRWSGYKIDDYGTKIVINFK* |
Ga0114346_10503573 | F105174 | N/A | MLQVTEKVKNKTYEISLKSTGIVVGSFVNIDGFFYYEPSKNKTWGFWSEEFLKSLSNEIEKLNYPINKSIEEYFHSEN* |
Ga0114346_10503575 | F070106 | GGAG | MKKGKKIFVIYNPHSKGYYDGYGFFREILFSKKYSEKESAILELEKILDDSVGKTFLKIQSFHTT* |
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